@prefix : . @prefix owl: . @prefix rdf: . @prefix xml: . @prefix xsd: . @prefix rdfs: . @base . rdf:type owl:Ontology . ################################################################# # Annotation properties ################################################################# ### http://purl.obolibrary.org/obo/IAO_0000112 rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/IAO_0000115 rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/IAO_0000116 rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#definition rdf:type owl:AnnotationProperty . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0010015 rdf:type owl:AnnotationProperty ; rdfs:label "has acronym"@en ; "A relation between an entity and its abbreviated form, representing a shortened version of the original term or phrase." . ################################################################# # Object Properties ################################################################# ### http://purl.obolibrary.org/obo/IAO_0000235 rdf:type owl:ObjectProperty ; rdfs:domain ; rdfs:range ; "inverse of the relation 'denotes'"@en ; rdfs:label "denoted by"@en . ### http://purl.obolibrary.org/obo/RO_0001025 rdf:type owl:ObjectProperty , owl:TransitiveProperty ; rdfs:domain , [ owl:intersectionOf ( [ rdf:type owl:Class ; owl:complementOf ] ) ; rdf:type owl:Class ] ; rdfs:range , [ owl:intersectionOf ( [ rdf:type owl:Class ; owl:complementOf ] ) ; rdf:type owl:Class ] ; "my brain is located in my head"@en , "this rat is located in this cage"@en ; "a relation between two independent continuants, the target and the location, in which the target is entirely within the location"@en ; "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus"@en , "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en ; rdfs:label "located in"@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000182 rdf:type owl:ObjectProperty ; rdfs:domain ; rdfs:range ; rdfs:label "has parent organization"@en ; "The property is a parental relationship between organizations."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0001006 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf ; rdfs:range ; rdfs:label "has external identifier"@en ; "The property relates a thing to the corresponding entry or related concept of the item in a central register, e.g. GND, VIAF, RISM, Wikidata or ROR."@en . ################################################################# # Classes ################################################################# ### http://purl.obolibrary.org/obo/BFO_0000001 rdf:type owl:Class ; "Julius Caesar"@en , "Verdi’s Requiem"@en , "the Second World War"@en , "your body mass index"@en ; "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81"@en ; rdfs:label "entity"@en ; "(Elucidation) An entity is anything that exists or has existed or will exist"@en . ### http://purl.obolibrary.org/obo/BFO_0000002 rdf:type owl:Class ; rdfs:subClassOf ; "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts."@en ; "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240"@en ; rdfs:label "continuant"@en ; "(Elucidation) A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity"@en . ### http://purl.obolibrary.org/obo/BFO_0000004 rdf:type owl:Class ; rdfs:subClassOf ; owl:disjointWith ; "a chair"@en , "a heart"@en , "a leg"@en , "a molecule"@en , "a spatial region"@en , "an atom"@en , "an orchestra."@en , "an organism"@en , "the bottom right portion of a human torso"@en , "the interior of your mouth"@en ; "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"@en ; rdfs:label "independent continuant"@en ; "b is an independent continuant =Def b is a continuant & there is no c such that b specifically depends on c or b generically depends on c"@en . ### http://purl.obolibrary.org/obo/BFO_0000006 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "spatial region"@en ; "(Elucidation) A spatial region is a continuant entity that is a continuant part of the spatial projection of a portion of spacetime at a given time"@en . ### http://purl.obolibrary.org/obo/BFO_0000029 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "site"@en ; "(Elucidation) A site is a three-dimensional immaterial entity whose boundaries either (partially or wholly) coincide with the boundaries of one or more material entities or have locations determined in relation to some material entity"@en . ### http://purl.obolibrary.org/obo/BFO_0000031 rdf:type owl:Class ; rdfs:subClassOf ; "The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity."@en , "the pdf file on your laptop, the pdf file that is a copy thereof on my laptop"@en , "the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule."@en ; "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])"@en ; rdfs:label "generically dependent continuant"@en ; "(Elucidation) A generically dependent continuant is an entity that exists in virtue of the fact that there is at least one of what may be multiple copies which is the content or the pattern that multiple copies would share"@en . ### http://purl.obolibrary.org/obo/BFO_0000141 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "immaterial entity"@en ; "b is an immaterial entity =Def b is an independent continuant which is such that there is no time t when it has a material entity as continuant part"@en . ### http://purl.obolibrary.org/obo/IAO_0000030 rdf:type owl:Class ; rdfs:subClassOf ; "Examples of information content entites include journal articles, data, graphical layouts, and graphs."@en , "Examples of information content entites include journal articles, data, graphical layouts, and graphs." ; "A generically dependent continuant that is about some thing."@en , "An information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity." ; "2014-03-10: The use of \"thing\" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ)."@en , """information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907). Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity."""@en ; rdfs:label "information content entity"@en , "information content entity" . ### http://purl.obolibrary.org/obo/IAO_0000300 rdf:type owl:Class ; rdfs:subClassOf ; "Words, sentences, paragraphs, and the written (non-figure) parts of publications are all textual entities"@en ; "A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc."@en ; "AR, (IAO call 2009-09-01): a document as a whole is not typically a textual entity, because it has pictures in it - rather there are parts of it that are textual entities. Examples: The title, paragraph 2 sentence 7, etc."@en , "MC, 2009-09-14 (following IAO call 2009-09-01): textual entities live at the FRBR (http://en.wikipedia.org/wiki/Functional_Requirements_for_Bibliographic_Records) manifestation level. Everything is significant: line break, pdf and html versions of same document are different textual entities."@en ; rdfs:label "textual entity"@en . ### http://purl.obolibrary.org/obo/IAO_0000303 rdf:type owl:Class ; rdfs:subClassOf ; "University of Colorado Denver School of Medicine"@en ; "A textual entity intended to identify a particular institution"@en ; rdfs:label "institutional identification"@en . ### http://purl.obolibrary.org/obo/IAO_0000578 rdf:type owl:Class ; rdfs:subClassOf ; "The sentence \"The article has Pubmed ID 12345.\" contains a CRID that has two parts: one part is the CRID symbol, which is '12345'; the other part denotes the CRID registry, which is Pubmed."@en ; "An information content entity that consists of a CRID symbol and additional information about the CRID registry to which it belongs."@en ; "2014-05-05: In defining this term we take no position on what the CRID denotes. In particular do not assume it denotes a *record* in the CRID registry (since the registry might not have 'records')."@en , "Alan, IAO call 20101124: potentially the CRID denotes the instance it was associated with during creation."@en , "Note, IAO call 20101124: URIs are not always CRID, as not centrally registered. We acknowledge that CRID is a subset of a larger identifier class, but this subset fulfills our current needs. OBI PURLs are CRID as they are registered with OCLC. UPCs (Universal Product Codes from AC Nielsen)are not CRID as they are not centrally registered."@en ; rdfs:label "centrally registered identifier"@en . ### http://purl.obolibrary.org/obo/IAO_0020000 rdf:type owl:Class ; rdfs:subClassOf ; "An information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity."@en ; rdfs:label "identifier"@en . ### http://purl.obolibrary.org/obo/OBI_0000245 rdf:type owl:Class ; rdfs:subClassOf ; "PMID: 16353909.AAPS J. 2005 Sep 22;7(2):E274-80. Review. The joint food and agriculture organization of the United Nations/World Health Organization Expert Committee on Food Additives and its role in the evaluation of the safety of veterinary drug residues in foods."@en ; "An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members."@en ; """BP: The definition summarizes long email discussions on the OBI developer, roles, biomaterial and denrie branches. It leaves open if an organization is a material entity or a dependent continuant, as no consensus was reached on that. The current placement as material is therefore temporary, in order to move forward with development. Here is the entire email summary, on which the definition is based: 1) there are organization_member_roles (president, treasurer, branch editor), with individual persons as bearers 2) there are organization_roles (employer, owner, vendor, patent holder) 3) an organization has a charter / rules / bylaws, which specify what roles there are, how they should be realized, and how to modify the charter/rules/bylaws themselves. It is debatable what the organization itself is (some kind of dependent continuant or an aggregate of people). This also determines who/what the bearer of organization_roles' are. My personal favorite is still to define organization as a kind of 'legal entity', but thinking it through leads to all kinds of questions that are clearly outside the scope of OBI. Interestingly enough, it does not seem to matter much where we place organization itself, as long as we can subclass it (University, Corporation, Government Agency, Hospital), instantiate it (Affymetrix, NCBI, NIH, ISO, W3C, University of Oklahoma), and have it play roles. This leads to my proposal: We define organization through the statements 1 - 3 above, but without an 'is a' statement for now. We can leave it in its current place in the is_a hierarchy (material entity) or move it up to 'continuant'. We leave further clarifications to BFO, and close this issue for now."""@en ; rdfs:label "organization"@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000005 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "place"@en ; "A site that refers to geographical locations, such as cities, countries, landmarks, and natural environments."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000102 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "agent"@en ; "An independent continuant that acts autonomously and is entrusted with the authority to represent, negotiate, or act on behalf of another agent."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000106 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "city"@en ; "A place that refers to a densely populated urban area."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000119 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "country"@en ; "A place that refers to a defined geographical area distinguished by its territorial boundaries, governance structure, and sovereignty."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0001013 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "ROR identifier"@en ; "ROR (Research Organization Registry) is a global, open, and community-driven registry of research organizations. It provides unique identifiers for institutions involved in research, enabling better data integration, disambiguation, and interoperability across scholarly communication systems."@en ; "ROR"@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0001041 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "postal code"@en ; "An identifier that denotes some postal delivery route, some aggregate of postal delivery routes or a geographical region and was created for the purpose of sorting and delivering mail." . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0001042 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "zone improvement plan code"@en ; "A postal code that is used in the United States for the purpose of sorting and delivering mail, and that denotes some postal delivery route or some aggregate of postal delivery routes." . ### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi