@prefix : . @prefix owl: . @prefix rdf: . @prefix xml: . @prefix xsd: . @prefix rdfs: . @base . rdf:type owl:Ontology . ################################################################# # Annotation properties ################################################################# ### http://purl.obolibrary.org/obo/IAO_0000112 rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/IAO_0000115 rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/IAO_0000116 rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#definition rdf:type owl:AnnotationProperty . ################################################################# # Object Properties ################################################################# ### http://purl.obolibrary.org/obo/IAO_0000219 rdf:type owl:ObjectProperty ; owl:inverseOf ; rdfs:domain ; rdfs:range ; "A person's name denotes the person. A variable name in a computer program denotes some piece of memory. Lexically equivalent strings can denote different things, for instance \"Alan\" can denote different people. In each case of use, there is a case of the denotation relation obtaining, between \"Alan\" and the person that is being named."@en ; "A primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically"@en ; """2009-11-10 Alan Ruttenberg. Old definition said the following to emphasize the generic nature of this relation. We no longer have 'specifically denotes', which would have been primitive, so make this relation primitive. g denotes r =def r is a portion of reality there is some c that is a concretization of g every c that is a concretization of g specifically denotes r"""@en ; rdfs:label "denotes"@en . ### http://purl.obolibrary.org/obo/IAO_0000235 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf ; rdfs:domain ; rdfs:range ; "inverse of the relation 'denotes'"@en ; rdfs:label "denoted by"@en . ### http://purl.obolibrary.org/obo/RO_0000056 rdf:type owl:ObjectProperty ; rdfs:domain ; rdfs:range ; "this blood clot participates in this blood coagulation"@en , "this input material (or this output material) participates in this process"@en , "this investigator participates in this investigation"@en ; "a relation between a continuant and a process, in which the continuant is somehow involved in the process"@en ; rdfs:label "participates in"@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000142 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf ; rdfs:range ; rdfs:label "has license"@en ; "The property is a relationship between a resource and a license file." . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000187 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf ; rdfs:range ; rdfs:label "has programming language"@en ; "The property links software to a programming language its written in." . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000211 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf ; rdfs:range ; rdfs:label "has subject area"@en ; "The property establishes a connection between a resource, an agent, or a project, and the academic discipline, subject area, or domain within which they operate."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000216 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf ; rdfs:range ; rdfs:label "has technology"@en ; "The property is a relationship between a resource and a technology it uses."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000226 rdf:type owl:ObjectProperty ; rdfs:label "is subject of"@en ; "inverse of the relation 'is about'" . ################################################################# # Classes ################################################################# ### http://purl.obolibrary.org/obo/BFO_0000001 rdf:type owl:Class ; "Julius Caesar"@en , "Verdi’s Requiem"@en , "the Second World War"@en , "your body mass index"@en ; "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81"@en ; rdfs:label "entity"@en ; "(Elucidation) An entity is anything that exists or has existed or will exist"@en . ### http://purl.obolibrary.org/obo/BFO_0000002 rdf:type owl:Class ; rdfs:subClassOf ; owl:disjointWith ; "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts."@en ; "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240"@en ; rdfs:label "continuant"@en ; "(Elucidation) A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity"@en . ### http://purl.obolibrary.org/obo/BFO_0000003 rdf:type owl:Class ; rdfs:subClassOf ; "An entity that has temporal parts and that happens, unfolds or develops through time."@en ; "BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region"@en , "BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players."@en ; rdfs:label "occurrent"@en ; "(Elucidation) An occurrent is an entity that unfolds itself in time or it is the start or end of such an entity or it is a temporal or spatiotemporal region"@en . ### http://purl.obolibrary.org/obo/BFO_0000031 rdf:type owl:Class ; rdfs:subClassOf ; "The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity."@en , "the pdf file on your laptop, the pdf file that is a copy thereof on my laptop"@en , "the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule."@en ; "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])"@en ; rdfs:label "generically dependent continuant"@en ; "(Elucidation) A generically dependent continuant is an entity that exists in virtue of the fact that there is at least one of what may be multiple copies which is the content or the pattern that multiple copies would share"@en . ### http://purl.obolibrary.org/obo/IAO_0000010 rdf:type owl:Class ; rdfs:subClassOf ; """Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit."""@en ; "see sourceforge tracker discussion at http://sourceforge.net/tracker/index.php?func=detail&aid=1958818&group_id=177891&atid=886178"@en ; rdfs:label "software"@en . ### http://purl.obolibrary.org/obo/IAO_0000025 rdf:type owl:Class ; rdfs:subClassOf ; "R, Perl, Java"@en ; "A language in which source code is written that is intended to be executed/run by a software interpreter. Programming languages are ways to write instructions that specify what to do, and sometimes, how to do it."@en ; rdfs:label "programming language"@en . ### http://purl.obolibrary.org/obo/IAO_0000028 rdf:type owl:Class ; rdfs:subClassOf ; "a serial number such as \"12324X\""@en , "a stop sign"@en , "a written proper name such as \"OBI\""@en ; "An information content entity that is a mark(s) or character(s) used as a conventional representation of another entity."@en ; "20091104, MC: this needs work and will most probably change"@en , "2014-03-31: We would like to have a deeper analysis of 'mark' and 'sign' in the future (see https://github.com/information-artifact-ontology/IAO/issues/154)."@en ; rdfs:label "symbol"@en . ### http://purl.obolibrary.org/obo/IAO_0000030 rdf:type owl:Class ; rdfs:subClassOf ; "Examples of information content entites include journal articles, data, graphical layouts, and graphs." , "Examples of information content entites include journal articles, data, graphical layouts, and graphs."@en ; "A generically dependent continuant that is about some thing."@en , "An information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity." ; "2014-03-10: The use of \"thing\" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ)."@en , """information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907). Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity."""@en ; rdfs:label "information content entity" , "information content entity"@en . ### http://purl.obolibrary.org/obo/IAO_0000033 rdf:type owl:Class ; rdfs:subClassOf ; "An information content entity whose concretizations indicate to their bearer how to realize them in a process."@en ; "2009-03-16: provenance: a term realizable information entity was proposed for OBI (OBI_0000337) , edited by the PlanAndPlannedProcess branch. Original definition was \"is the specification of a process that can be concretized and realized by an actor\" with alternative term \"instruction\".It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term."@en , "2013-05-30 Alan Ruttenberg: What differentiates a directive information entity from an information concretization is that it can have concretizations that are either qualities or realizable entities. The concretizations that are realizable entities are created when an individual chooses to take up the direction, i.e. has the intention to (try to) realize it."@en , "8/6/2009 Alan Ruttenberg: Changed label from \"information entity about a realizable\" after discussions at ICBO"@en , "Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan"@en ; rdfs:label "directive information entity"@en . ### http://purl.obolibrary.org/obo/IAO_0000104 rdf:type owl:Class ; rdfs:subClassOf ; "PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice."@en ; "A directive information entity with action specifications and objective specifications as parts, and that may be concretized as a realizable entity that, if realized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified."@en ; "2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was \" a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan\". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term."@en , "2014-03-31: A plan specification can have other parts, such as conditional specifications."@en , "2022-01-16 Updated definition to that proposed by Clint Dowloand, IAO Issue 231."@en , "Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved"@en ; rdfs:label "plan specification"@en . ### http://purl.obolibrary.org/obo/IAO_0000129 rdf:type owl:Class ; rdfs:subClassOf ; "A version number is an information content entity which is a sequence of characters borne by part of each of a class of manufactured products or its packaging and indicates its order within a set of other products having the same name."@en ; "Note: we feel that at the moment we are happy with a general version number, and that we will subclass as needed in the future. For example, see 7. genome sequence version"@en ; rdfs:label "version number"@en . ### http://purl.obolibrary.org/obo/IAO_0000300 rdf:type owl:Class ; rdfs:subClassOf ; "Words, sentences, paragraphs, and the written (non-figure) parts of publications are all textual entities"@en ; "A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc."@en ; "AR, (IAO call 2009-09-01): a document as a whole is not typically a textual entity, because it has pictures in it - rather there are parts of it that are textual entities. Examples: The title, paragraph 2 sentence 7, etc."@en , "MC, 2009-09-14 (following IAO call 2009-09-01): textual entities live at the FRBR (http://en.wikipedia.org/wiki/Functional_Requirements_for_Bibliographic_Records) manifestation level. Everything is significant: line break, pdf and html versions of same document are different textual entities."@en ; rdfs:label "textual entity"@en . ### http://www.ebi.ac.uk/swo/SWO_0000002 rdf:type owl:Class ; rdfs:subClassOf ; "A licence is a legal instrument (usually by way of contract law, with or without printed material) governing the use or redistribution of the resource containing the licence." ; rdfs:label "licence"@en , "software license" . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000100 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "academic discipline"@en ; "An information content entity that specifies the subject area, domain or academic discipline of an entity. An academic discipline, a research field or domain of an entity, e.g. a domain of a data portal or a field of study of a person."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000121 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "database software"@en ; "Software that provides large amounts of structured data from repositories and archives to the user. Usually the data can be uploaded, accessed, searched and/or downloaded via a web browser."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000123 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "data portal"@en ; "A website that serves as a centralized platform for accessing, managing, and sharing datasets, information, or resources related to a specific topic, theme, or domain."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000215 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "technological method specification"@en ; "A plan specification that refers to a technology method employed for the creation, management, utilization, or control of a digital resource."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000223 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "website"@en ; "An information content entity that represents a collection of interconnected web pages, multimedia content, and digital resources accessible via the World Wide Web."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0001000 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "software title"@en ; "A textual entity that uniquely identifies a specific software application, program, or system, often used for branding, categorization, and reference in documentation, licensing, and distribution." . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0001018 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "textual description"@en ; "A textual entity that describe some resource."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0001019 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "title"@en ; "A textual entity that denotes some resource."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0001047 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "operating system"@en ; "An Operating System (OS) is a software system that manages computer hardware and software resources and provides common services for computer programs. It acts as an intermediary between users and the computer hardware, enabling the execution of application programs." . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0001210 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "software repository"@en ; "A Software Repository is a data portal designed to store, manage, and distribute software packages, source code, and related documentation for research, development, and deployment purposes." . ### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi