@prefix : . @prefix owl: . @prefix rdf: . @prefix xml: . @prefix xsd: . @prefix rdfs: . @base . rdf:type owl:Ontology . ################################################################# # Annotation properties ################################################################# ### http://purl.obolibrary.org/obo/IAO_0000112 rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/IAO_0000115 rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/IAO_0000116 rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#definition rdf:type owl:AnnotationProperty . ################################################################# # Object Properties ################################################################# ### http://purl.obolibrary.org/obo/BFO_0000051 rdf:type owl:ObjectProperty , owl:TransitiveProperty ; "my body has part my brain (continuant parthood, two material entities)"@en , "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)"@en , "this year has part this day (occurrent parthood)"@en ; "a core relation that holds between a whole and its part"@en ; "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part."@en , "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en , """Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'."""@en ; rdfs:label "has part"@en . ### http://purl.obolibrary.org/obo/IAO_0000235 rdf:type owl:ObjectProperty ; rdfs:domain ; rdfs:range ; "inverse of the relation 'denotes'"@en ; rdfs:label "denoted by"@en . ################################################################# # Data properties ################################################################# ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0001008 rdf:type owl:DatatypeProperty ; rdfs:range xsd:anyURI ; rdfs:label "has url"@en ; "A relation between an information content entity and its specific url."@en . ################################################################# # Classes ################################################################# ### http://purl.obolibrary.org/obo/BFO_0000001 rdf:type owl:Class ; "Julius Caesar"@en , "Verdi’s Requiem"@en , "the Second World War"@en , "your body mass index"@en ; "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81"@en ; rdfs:label "entity"@en ; "(Elucidation) An entity is anything that exists or has existed or will exist"@en . ### http://purl.obolibrary.org/obo/BFO_0000002 rdf:type owl:Class ; rdfs:subClassOf ; "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts."@en ; "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240"@en ; rdfs:label "continuant"@en ; "(Elucidation) A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity"@en . ### http://purl.obolibrary.org/obo/BFO_0000031 rdf:type owl:Class ; rdfs:subClassOf ; "The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity."@en , "the pdf file on your laptop, the pdf file that is a copy thereof on my laptop"@en , "the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule."@en ; "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])"@en ; rdfs:label "generically dependent continuant"@en ; "(Elucidation) A generically dependent continuant is an entity that exists in virtue of the fact that there is at least one of what may be multiple copies which is the content or the pattern that multiple copies would share"@en . ### http://purl.obolibrary.org/obo/IAO_0000010 rdf:type owl:Class ; rdfs:subClassOf ; """Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit."""@en ; "see sourceforge tracker discussion at http://sourceforge.net/tracker/index.php?func=detail&aid=1958818&group_id=177891&atid=886178"@en ; rdfs:label "software"@en . ### http://purl.obolibrary.org/obo/IAO_0000027 rdf:type owl:Class ; rdfs:subClassOf ; "Data items include counts of things, analyte concentrations, and statistical summaries."@en ; "An information content entity that is intended to be one or more truthful statement(s) about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements."@en ; "2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers."@en , "2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum."@en , "2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym."@en , "2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/" , """JAR: datum -- well, this will be very tricky to define, but maybe some information-like stuff that might be put into a computer and that is meant, by someone, to denote and/or to be interpreted by some process... I would include lists, tables, sentences... I think I might defer to Barry, or to Brian Cantwell Smith JAR: A data item is an approximately justified approximately true approximate belief"""@en ; rdfs:label "data entity"@en . ### http://purl.obolibrary.org/obo/IAO_0000030 rdf:type owl:Class ; rdfs:subClassOf ; "Examples of information content entites include journal articles, data, graphical layouts, and graphs."@en , "Examples of information content entites include journal articles, data, graphical layouts, and graphs." ; "A generically dependent continuant that is about some thing."@en , "An information content entity is an entity that is generically dependent on some artifact and stands in relation of aboutness to some entity." ; "2014-03-10: The use of \"thing\" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ)."@en , """information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907). Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity."""@en ; rdfs:label "information content entity"@en , "information content entity" . ### http://purl.obolibrary.org/obo/IAO_0000033 rdf:type owl:Class ; rdfs:subClassOf ; "An information content entity whose concretizations indicate to their bearer how to realize them in a process."@en ; "2009-03-16: provenance: a term realizable information entity was proposed for OBI (OBI_0000337) , edited by the PlanAndPlannedProcess branch. Original definition was \"is the specification of a process that can be concretized and realized by an actor\" with alternative term \"instruction\".It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term."@en , "2013-05-30 Alan Ruttenberg: What differentiates a directive information entity from an information concretization is that it can have concretizations that are either qualities or realizable entities. The concretizations that are realizable entities are created when an individual chooses to take up the direction, i.e. has the intention to (try to) realize it."@en , "8/6/2009 Alan Ruttenberg: Changed label from \"information entity about a realizable\" after discussions at ICBO"@en , "Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan"@en ; rdfs:label "directive information entity"@en . ### http://purl.obolibrary.org/obo/IAO_0000104 rdf:type owl:Class ; rdfs:subClassOf ; "PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice."@en ; "A directive information entity with action specifications and objective specifications as parts, and that may be concretized as a realizable entity that, if realized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified."@en ; "2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was \" a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan\". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term."@en , "2014-03-31: A plan specification can have other parts, such as conditional specifications."@en , "2022-01-16 Updated definition to that proposed by Clint Dowloand, IAO Issue 231."@en , "Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved"@en ; rdfs:label "plan specification"@en . ### http://purl.obolibrary.org/obo/IAO_0001000 rdf:type owl:Class ; rdfs:subClassOf ; "A data entity that consists of multiple data entities."@en ; rdfs:label "data collection"@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0000222 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "web application software"@en ; "Software that is installed on a server and can be used by users via a web page and the internet, for example Software-as-a-service (SaaS)."@en . ### https://nfdi.fiz-karlsruhe.de/ontology/NFDI_0001095 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "sparql endpoint"@de ; "A SPARQL Endpoint is a web application software that provides a queryable interface for accessing and retrieving structured data from RDF-based knowledge graphs using the SPARQL query language."@en . ### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi